Model Initialization and Visualization

You can download the XML specifications for this model here:

5KB

plexus_SAC.zip

archive

Open

Similar to the single SAC example, model Initialization is done using:

# Parse model specifications from the meta-parameters XML file
simulation_parameters = SimulationParameters(
    "simulation_parameters/plexus_SAC_meta.xml",
    note = 'plexus_SAC') 

# Use the model specification to initiate a new simulation
simulation = Simulation(simulation_parameters)

Plot the modeled network morphology:

simulation.plot_morphologies()

Get the soma plot:

simulation.plot_morphologies(soma_plt = True)

The synapse distribution:

Note that BC-SAC synapses are colored in red and SAC-SAC are colored in yellow-green, indicating pre-post synaptic connections.

Similar to a single SAC, you can plot the channel distribution. RSME will generate a plot for each SAC.