Logger

RSME generates a logger for each simulation. The logger is fairly detailed and it is generated in the corresponding results folder.

An example of a generated log is:

2021-10-12 21:08:30,392 - sim_dt: 0.025  | light_dt: 0.2
2021-10-12 21:08:30,392 - scale_factor: 0.25
2021-10-12 21:08:30,393 - offset: 0.615
2021-10-12 21:08:30,393 - transition_placement: 102
2021-10-12 21:08:30,393 - refiling_rate: 3.765
2021-10-12 21:08:30,393 - release_probability: 0.081
2021-10-12 21:08:30,393 - offset_dyn: 3.89e-06
2021-10-12 21:08:30,393 - syn_weight: 2.452e-06
2021-10-12 21:08:30,393 - kinetic_change_end: 135
2021-10-12 21:08:30,393 - Layer 1 parsing initiated
2021-10-12 21:08:30,393 - Simulation  SAC-DSGC_network  has initiated. Simulation duration: 1500 msec
2021-10-12 21:08:30,393 - Layer 1 parsing concluded
2021-10-12 21:08:30,393 - Layer 2 parsing initiated
2021-10-12 21:08:30,393 - Visual stimulation: alternating_bar with parameters:
    tgt_population =  0 1; 
    field = 315 mm; 
    frequancy = 4 Hz; blocked_field = 0 mm; center = (260,250); delay = 0
2021-10-12 21:08:30,394 - Layer 2 parsing concluded
2021-10-12 21:08:30,394 - Layer 3 parsing initiated
2021-10-12 21:08:30,394 - Parsing population <Element '{RSME.simulation_parameters}population' at 0x7fcbb8277590>, cell id: 0
2021-10-12 21:08:30,394 - Topology: grid arrangement [n = [3, 3]], cornered at [0, 0, 0], spaced with [125, 125]]
2021-10-12 21:08:30,394 - Topology: grid arrangement [n = [2, 2]], cornered at [62, 67, 0], spaced with [125, 125]]
2021-10-12 21:08:30,394 - Parsing population <Element '{RSME.simulation_parameters}population' at 0x7fcbb8277d10>, cell id: 1
2021-10-12 21:08:30,394 - Topology: instances [id = 2], located at [0, 0, 0]
2021-10-12 21:08:30,395 - Parsing projections
2021-10-12 21:08:30,395 - Projection 0 1
2021-10-12 21:08:30,395 - connectivity pattern: x_y_intersection, aligned to: [135, 100]
2021-10-12 21:08:30,395 - Synapse distribution rule: preffered_direction [1, 0], computed with: cosine_similarity
2021-10-12 21:08:30,395 - Layer 3 parsing concluded
2021-10-12 21:08:30,395 - Layer 4 parsing initiated
2021-10-12 21:08:30,397 - Parsed file name: SAChocLea.hoc
2021-10-12 21:08:30,397 - Parsed equation for diameter fix is: 0.2 * exp(-x / 40) + 0.15
2021-10-12 21:08:30,398 - Parsed file name: cell_12_trace.hoc
2021-10-12 21:08:30,398 - Parsed equation for diameter fix is: 0.2 * exp(-x / 40) + 0.15
2021-10-12 21:08:30,398 - Lacenter_and_scale_morphologyyer 4 parsing concluded
2021-10-12 21:08:30,398 - Layer 5 parsing initiated
2021-10-12 21:08:30,398 - Parsed equation for spatial distribution of g_pas is: 6e-05
2021-10-12 21:08:30,398 - Parsed equation for spatial distribution of e_pas is: -60
2021-10-12 21:08:30,399 - Parsed equation for synapse property density_function is: 0 + lt(x, 125) * 0.2
2021-10-12 21:08:30,399 - Parsed equation for synapse property weight is: 0.8
2021-10-12 21:08:30,399 - Parsed equation for synapse property delay is: 1
2021-10-12 21:08:30,399 - Parsed equation for synapse property tau is: 5
2021-10-12 21:08:30,400 - Parsed equation for synapse property e is: 0
2021-10-12 21:08:30,400 - Parsed equation for synapse property weight is: 0.05
2021-10-12 21:08:30,400 - Parsed equation for synapse property delay is: 0.1
2021-10-12 21:08:30,400 - Layer 5 parsing concluded
2021-10-12 21:08:30,401 - Simulation was succefully parametrized
2021-10-12 21:08:30,401 - Loading 14 morphologies
2021-10-12 21:08:30,401 - Instanting from: SAChocLea.hoc
2021-10-12 21:08:30,441 - Instanting cell: 1
2021-10-12 21:08:30,534 - Cell scaled by [0.5, 0.5, 0]
2021-10-12 21:08:30,571 - Cell should be shifted by [-136.6240234375, -126.17727661132812] for 0,0 alignment
2021-10-12 21:08:30,571 - Cell is shifted by [136.6240234375, 126.17727661132812, 0]
2021-10-12 21:08:30,572 - Cell is arranged into a grid at [[0, 250], [0, 250]]
2021-10-12 21:08:30,572 - Instanting cell: 2
2021-10-12 21:08:30,661 - Cell scaled by [0.5, 0.5, 0]
2021-10-12 21:08:30,697 - Cell should be shifted by [-136.6240234375, -126.17727661132812] for 0,0 alignment
2021-10-12 21:08:30,697 - Cell is shifted by [136.6240234375, 126.17727661132812, 0]
2021-10-12 21:08:30,698 - Cell is arranged into a grid at [[125, 375], [0, 250]]
2021-10-12 21:08:30,698 - Cell is shifted by [125, 0, 0]
2021-10-12 21:08:30,699 - Instanting cell: 3
....