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Retinal Stimulation Modeling Environment
  • Retinal Stimulation Modeling Environment (RSME)
  • Preliminaries
    • Python
    • NEURON
    • Systems Biology Markup Language
    • RSME and Model initialization
  • Model specification
    • Meta-parameters
    • Morphology Description
    • Network Description
    • Visual Stimulation
    • Biophysical Description
  • Visual Stimulation
  • Single SAC model
    • Model Initialization
    • Model Visualization
    • Model Simulation
  • SAC plexus model
    • Before we begin
    • Model Initialization and Visualization
    • Model Simulation
  • SAC-DSGC network
    • Model initialization and visualization
    • Model Simulation
  • Logger
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  1. Model specification

Meta-parameters

This is a meta-parameters specification, in which a simulation description can be given, simulation duration is specified, and references to four other XML files are given.

In the following meta-parameters XML file, we defined a 1.5-second simulation and provide references to four other model specification XML files, described next.

<simulation_parameters xmlns="RSME">

  <simulation_description> single_SAC  </simulation_description>
  <simulation_duration>    1500        </simulation_duration>

  <visual_stimulation> single_SAC_visual_expanding.xml  </visual_stimulation>
  <network>            single_SAC_network.xml           </network>
  <morphology>         single_SAC_morphology.xml        </morphology>
  <biophysics>         single_SAC_biophysics.xml        </biophysics>

</simulation_parameters>

In the following chapters, the four specification files will be described.

PreviousModel specificationNextMorphology Description

Last updated 3 years ago

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