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Retinal Stimulation Modeling Environment
  • Retinal Stimulation Modeling Environment (RSME)
  • Preliminaries
    • Python
    • NEURON
    • Systems Biology Markup Language
    • RSME and Model initialization
  • Model specification
    • Meta-parameters
    • Morphology Description
    • Network Description
    • Visual Stimulation
    • Biophysical Description
  • Visual Stimulation
  • Single SAC model
    • Model Initialization
    • Model Visualization
    • Model Simulation
  • SAC plexus model
    • Before we begin
    • Model Initialization and Visualization
    • Model Simulation
  • SAC-DSGC network
    • Model initialization and visualization
    • Model Simulation
  • Logger
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  1. Preliminaries

Systems Biology Markup Language

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Last updated 3 years ago

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LibSBML is an XML-based open-source software library that provides an API (Application Programming Interface) for the SBML (Systems Biology Markup Language) format.

Learn about SBML in:

RSME is using SBML to specify the biophysical properties of your retinal model (e.g., distribution of channels and synapses).

InstaIl SBML for python in your RSME environment using:

pip install python-libsbml

RSME was tested with libSBML version 5.19.0

http://sbml.org/Main_Pagesbml.org